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Biotechnology Information command line utility
Command Line Utility, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line+utility/command+line+tools/pmc12691591-23-33-3
Average 86 stars, based on 1 article reviews
command line utility - by Bioz Stars, 2026-11
86/100 stars

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Related Articles

Sequencing:

Article Title: Challenges and considerations for whole-genome-based antimicrobial resistance plasmid investigations
Article Snippet: SeqSphere+ ( ) , 2024 , Real-time plasmid transmission detection pipeline based on Mash distance. Includes plasmid reconstruction and typing using MOB-suite. Users can visualize output on the same platform. Available as a desktop application. Accessible at: https://www.ridom.de/seqsphere/u/Long-read_Data_Plasmid_Transmission_Analysis_Module.html. .. National Center for Biotechnology Information (NCBI) , N/A , NCBI nucleotide database for general genome sequence queries and download. Users can restrict search to “Genetic compartments: Plasmid” for the desired species or genus. Command line utility ( ncbi-genome-download ) available to download sequences with customizable parameters. Accessible at: https://www.ncbi.nlm.nih.gov/nucleotide/. .. PLSDB ( , ) , 2019 , Open access database containing plasmid sequences retrieved from NCBI Nucleotide. Sequence metadata is available for download. Users can upload their own plasmid FASTA sequence and search for similar matches using the BLAST utility. Metadata filtering is available. The database was last updated on 31 May 2024. Accessible at: https://ccb-microbe.cs.uni-saarland.de/plsdb/.

Plasmid Preparation:

Article Title: Challenges and considerations for whole-genome-based antimicrobial resistance plasmid investigations
Article Snippet: SeqSphere+ ( ) , 2024 , Real-time plasmid transmission detection pipeline based on Mash distance. Includes plasmid reconstruction and typing using MOB-suite. Users can visualize output on the same platform. Available as a desktop application. Accessible at: https://www.ridom.de/seqsphere/u/Long-read_Data_Plasmid_Transmission_Analysis_Module.html. .. National Center for Biotechnology Information (NCBI) , N/A , NCBI nucleotide database for general genome sequence queries and download. Users can restrict search to “Genetic compartments: Plasmid” for the desired species or genus. Command line utility ( ncbi-genome-download ) available to download sequences with customizable parameters. Accessible at: https://www.ncbi.nlm.nih.gov/nucleotide/. .. PLSDB ( , ) , 2019 , Open access database containing plasmid sequences retrieved from NCBI Nucleotide. Sequence metadata is available for download. Users can upload their own plasmid FASTA sequence and search for similar matches using the BLAST utility. Metadata filtering is available. The database was last updated on 31 May 2024. Accessible at: https://ccb-microbe.cs.uni-saarland.de/plsdb/.



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